NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209550_10076829

Scaffold Ga0209550_10076829


Overview

Basic Information
Taxon OID3300027892 Open in IMG/M
Scaffold IDGa0209550_10076829 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2576
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037070Metagenome168Y
F082681Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209550_100768292F082681GAGMIEWIVILLIIFCIIVWHYTQSTNKYSLSQIKESQIPISLTTLWEEKNPIVVSEVKSRKIWSSDALKQTRFWGAQPIWQQYMSNPLAIQSVERTLQTTWAEILGISRIQSDTILRWFDISPIVFSTRTEAHIGPEGLRQLYGWATAVECSDGELRCILLHSGQKSRLPPGWQNLRWSDATVAHHPLWTQVQNIEVILRPGTVLLVPSHWILAIEPLMPENPFWWTRTDLHHPISRLAQDLNEKT
Ga0209550_100768293F037070AGGMSSAVAPMNPMGTPFSKGSSTEKFPIESSSTDPFFPPVCLNYHWDPTKIYKRSVPESLVPLPVDFRPYTKVCLEYRTSAAGEMAPEISDDMVFPQGGEVYPPDRYMRAVDKESLLRRLDRPLGTCDDKQYEPPQNGDMYVDRMLVPTSAKPPSRFVEEISMPQALLRAGTYQCRTEADQRNWERSPRLFNNATKQDRYRGPTEPPRQNIWADSRRCDVSGPTADKLTPNGCRAWGC
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