NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209550_10095195

Scaffold Ga0209550_10095195


Overview

Basic Information
Taxon OID3300027892 Open in IMG/M
Scaffold IDGa0209550_10095195 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2242
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F019817Metagenome227Y
F089995Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209550_100951951F001807GGAMTVLAIEDTQFTDTHVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIDLDPEEPIPLDEDGFCAYLDQLDPQWELVERDDFDLD
Ga0209550_100951953F001120N/AMTKKSVISFDRTIHGVNITEHGIKSVTKQIKLGPFQLTVNANLNGVKGSVSIPGTGLSIPNIKLI
Ga0209550_100951954F089995N/AMQMTVKMKESADKYGVGFIGGFVAPDGEIFYTSNMNDEDTQALLPDQLK
Ga0209550_100951956F019817N/AMETKLNPPVALTINQRNLYTYFLNHRKKYKNTPCYVPRCSTQVSRLDQYLNALIKLEQYGLVTVDRSSVNYTGWIMTEPKN
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