NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10000216

Scaffold Ga0209624_10000216


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10000216 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52703
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (88.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F000465Metagenome / Metatranscriptome1105Y
F018635Metagenome / Metatranscriptome234Y
F067999Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000021645F000410GGAMSRKLVWIEQPRFRGFACSECAWVFNSPGSPAGKSFDEMMRNFESQRDKDFALHVCADHPKTKRARE
Ga0209624_1000021654F018635GGAGGMLLNSTQGIPRSQHEDESSLLRRKIEEESSSLLRSNIEELNKNTVLLIAEAGKLIQASKQLSIRLQSFETPRTKLEGGT
Ga0209624_1000021655F000465N/AMRAVAIKKSSREKTIGFQEMGTLRCDGCVEEFFIGHNPKSVDKWVAERQANWLEKVLADEHERDKKHSDRIELPD
Ga0209624_1000021659F067999AGGAGMNYDKVQEIGGGMRGVLNEQTLVTTNPVRITLAETSQPEIDAYRARNDSLRELGEELSNLDGRILRAYRFRSAWLIRIVPPHTNISSWLASRWRLGAAVAHAVRIAVMSTRSIETDETRSERAQRTKEEGEEVRAIADKISNYARSVHRRYPSGEVVVGENDLAAQLRKRRDRVGSALNLLLGEQKVKKASLGGYWKLNV
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