NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10000238

Scaffold Ga0209624_10000238


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10000238 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49430
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (81.40%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000439Metagenome / Metatranscriptome1137Y
F003228Metagenome / Metatranscriptome499Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000023835F003228GGAGMEGKQPSNDRQLEPGQAAAKAALLAECDKLAAAGVTLVAVHFDGSGDDGVTEDVRCYDSEGYDYWSEDVEHDASHLQDHFDALVPRGFEINAGGFGDVVLDVKRRKITVEHTERFEDSYTTTYEI
Ga0209624_100002387F000439AGGAGGMEVVKETGVGSELLQAQGNNISAQQVVKAAHEELLLLMRQRAEIMKRIGTVKQTIAGLANLFGDQVLDDDLLELIDRKPNGRQPGFTKACRRVLMEVRRPLGAREVCMELERNAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSELEAPEIMASRRTA
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