NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10000358

Scaffold Ga0209624_10000358


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10000358 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40178
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032347Metagenome / Metatranscriptome180Y
F039552Metagenome / Metatranscriptome163Y
F065975Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000035813F032347GAGGLNIVVDFDAKNNILRGTLEGPMTGTILLDLYKRATEFMASHPPCRGILDFSRVTEFEISSDAIRQVAASPPVFPPGYMRVLVIPQIFIYGLARMFQILGEKSRPELQVVRTMEEAFQLLGVEDPEFYLLP
Ga0209624_1000035835F039552N/AARSLLNRTMDKVEDTTEIVHKTVVSPLRQVNGLMTALTTGLEVFLGQKRRHPKNGGSGVPQDEMFI
Ga0209624_100003588F065975GGAGGMRSAALIVAILWSSLALAKDYQWKEAKVIDITSEKRGAVVVPIASLVGGASTKTFYWVQTAETIYVLGPVIGKHQLVNVTLHEPTKIAIEGKIAHILDDYGQDRKIPIAEKVARPKSEDS
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