NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10000873

Scaffold Ga0209624_10000873


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10000873 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25437
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001742Metagenome / Metatranscriptome643Y
F002102Metagenome / Metatranscriptome593Y
F003000Metagenome / Metatranscriptome514Y
F006318Metagenome / Metatranscriptome376Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000087311F006318AGGAGGMWRQPPIWEPQGTKFRPYSITSLIFFYIGKFFGRLFGRHR
Ga0209624_1000087316F003000N/AMKADPQLGEMHDRFIDFHRQNPREGLGEALLVWMQDPLKPQDERGRFRVNPILLLLAIVLALVFGAFLFFSVVRS
Ga0209624_1000087319F002102AGGAGMLEDEKENRLKRKSGALDKFEPGGELAAIEDRNEREHRLNLLPAEQKGFAEESSRFAELCQYFAQQRMDIPLSIAERIGNVSKLPALDRIRAMQNINRELMEYIDDVGQDPGIRQ
Ga0209624_1000087326F001742GAGGMPDTETGDRGRDGQKIPRIGPEEAARVFAQCEHLLDSSPVFVENLRQVGFARFMAPLHEDILKLAVQPDSWGERTRARLISELFAGLKGIPAEDARVEEVVQFSNVVVPCFLLELGRRRQQIEIEFPNDPCDSAARFALRAGPFYPVHSVNSEQLVRLVAEAGEELVGLCYFGDRRSREHIEAQLTFESPITDS
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