 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027895 Open in IMG/M |
| Scaffold ID | Ga0209624_10079878 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2117 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001698 | Metagenome / Metatranscriptome | 650 | Y |
| F012935 | Metagenome / Metatranscriptome | 276 | Y |
| F014996 | Metagenome / Metatranscriptome | 258 | Y |
| F037832 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209624_100798781 | F012935 | N/A | VSSVSSVSSVSSRPERFFLIAGLHRWHELLAEGDYGRPSETSARLVRLADKGPDAGLHVVAWADGYATADRALRRAGLAHFGLRAVLRVLSAAESDSLLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLYSFLRTAFAQDNFGSSL |
| Ga0209624_100798782 | F037832 | GGAG | VTVDSSPYLSLRRAVQPAILAHFLLAEDRERARQLAAECEDLLFLTRELLKAAGLASITGDSAAVFFSADDDSDPQARLLGAYAEAGLLWAKVVGSTIALARALLERGDWDEVRRLASFLADAGEGGTATDLKIQLGKAVWAAYREPLQGVSSTMPPAAVGTAIDALRAVLAEVPGDVPDRNRQLNRFLPPLAGSVYAIMREQGVDIPYSSRVEHIAAGGVAKYPDIVELSLDEIAAEFDGLCHQPGDGLRHQPGNG |
| Ga0209624_100798783 | F001698 | AGGAG | MSGVINDVDALTEFRAHLMQFNRDLAENFATMRGHWRELGDVWRDDMYRLFGEALDEVTPGIAQYLAATEGHEAHLAALIERLHGYLETGLGAGAGSGAGPGRETSRTETDRGKQR |
| Ga0209624_100798784 | F014996 | GGA | VTTVHADIDALKRLHEALVRYRYAQRGVAERAGDEIEATRASLADKASRWAVRLEQDQAELDACRAGRTGTADCSGLAWAVEQASERLEHIRRWQLRVDEAAGEFGVTASGFRDLLDNDMPRAESQLLAGIASLEAARRVQAGGTRADPARP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |