NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10241059

Scaffold Ga0209624_10241059


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10241059 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1202
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039236Metagenome164N
F057529Metagenome / Metatranscriptome136Y
F066222Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209624_102410591F066222AGGAGLAEVNISDIDALADFRSHLSEFNKNLAESFATMRTHWRDLGEIWRDDMYRRFGDALEEVTPGVEKYLALTDGHEAYLLALVERL
Ga0209624_102410592F039236AGGAGMTLPADAPATALSPYLSLRQAVRPAIVTYTVLANEQEQAGALAEEADQLLEATRELLEAVGLVHLLSPRPGAQILGDDHEDRQARLLAAYADAGILWAKVVGHSIALADGLLGQARWDDVLRLADFLDNAGEKLVAESLRGQANEALHANYYARMNSIHDKMSKQETAAAIETLRSLPRAFQERKLEIALRLRPLGTSVKNLTRPDRQSRNTIDSAMSSLPDSADYYLAVLADIFHSLVK
Ga0209624_102410593F057529N/ARLPSTAESDALLGVASAASLADDRALFRDADWPYEQVEKFKPYSITSLYSFAHSALRRPA
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