Scaffold Ga0209777

Basic Information
Taxon OID	3300027896 Open in IMG/M
Scaffold ID	Ga0209777_10000016 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209777_10000016 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	323373
Total Scaffold Genes	326 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	259 (79.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

323373

Total Scaffold Genes

326 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

259 (79.45%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013170	Metagenome	273	Y
F079538	Metagenome / Metatranscriptome	115	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_10000016194	F079538	AGGA	LLLNFKDVRKCRNSVELNEFIEKYAAQGNPSNESFDSIYWNLFEEWKKALKAKPGRTLQRSR
Ga0209777_1000001628	F013170	GAG	MSVHLHTTITRKTDEMLEELAKTYGTKSHVLEQAIETLLRVEKVGSCDDCAVRTKMKEQTNLREALDLMSIDKRTIDSLLEVAIGNKTMKDFVAGQKAEAKNTVEILKGSVAWRKPSSFKEFMIILEEIKNLTRLIDIASFNELDNTIILRTRVFKRLPEVAAFQIATVLEGLQIPFDMRVMGEDIVIKMTREDLYLMKKRDFRESLSEQIEKRLLNSTPGLFRNTLMLVGPAFMNWAEKHLEEPISDFGAFLEDVRVATDLGELPKEPKEFVKSLLFGFINMNWFKQAKILQETDNTLEVSFQSTTPSVTKLSVVMLSVLLATRGWKLVKFSAEQTTANISIQYVGSGDSSLMDQIVEVSLYQTIGKQFLDAIPVPRELFNSFASKVYDSNKEKFNEIYHTMGVRVANAIRMMARDDTEKMRKLAQTYISKNAAFAQPEAEIRFVDSEHFTIIFKKIDLLAMNSQRALIESMFKELGYDISTTVFQNLLSFKLKQLEKPVLESVPRKKMMKALIDEMSASCADEAFEMIKEPIDETFPEDYPWTIREVGDRIIDMYRELDVEVEVEYFEGGFTLKYKTCPYYTLVKSGQKTWLCSVRKKTLDYIISRVSHGKKAKIKIIKSLLKNEHPCEYAVFLTGFLEDS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209777_10000016

Overview

Ecosystem & Geography

Associated Families

Sequences