NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209777_10000089

Scaffold Ga0209777_10000089


Overview

Basic Information
Taxon OID3300027896 Open in IMG/M
Scaffold IDGa0209777_10000089 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151237
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (23.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F052416Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209777_10000089131F052416N/AMNAPTIKPIIITSPISGQPCRPTLATYIRGGKKITEASYIDPASGAFIRKGIVSVEDVAKEEKK
Ga0209777_1000008978F016038N/AMPADINMLLPQKSLIDLSALPKNSFNSVFYGYKLRTILDDVLLVEYADESNDGTTIQRRGLHIPINADTKAWRIGKVILAGNGVKITKVGDYVLFPHNLGIPVSDIDVAGSGTLGKGIFLNEQRIFGICEIDKSNDESVASILTNSSAA

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