Scaffold Ga0209777

Basic Information
Taxon OID	3300027896 Open in IMG/M
Scaffold ID	Ga0209777_10000795 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209777_10000795 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49042
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (21.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

49042

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (21.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F089761	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_1000079524	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFSRSNWIGGAGHKWCPISNGQSLVSCVAQDDQMFIVQPFEGTNEGSFNMGYVYVKLPATQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDSRVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLTTDWAYNASLPTFNANDPTTWPRLVRVLPYIPVTTELGCKYIQNPAYNQADYGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSNLIVPAPCNLATNYAPQYTPDCYACSSVVTQPI
Ga0209777_1000079528	F030662	N/A	MRLKDKNGPIPNGLWYEYSDDKGIKYRVNGMESVYGKTFANKVASDMKVNNVSVPENLDYLIEQQICGRISNQYCWQEAGDKVANVIHTFASLGDRVAASLGVNTNLEKAAKGCTACQKRRQAMNQTIG
Ga0209777_1000079529	F048735	N/A	MNYKGFSLDEPQDTDYGIPFFNTLPQFVRELTAYRLTRGEFGRRERIKFKIKLEETTLKNPAQHMINCFQLIYGDDVLLKSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMKNLASKYGKDSAIGNLVEYRRMIVFETIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSSTTNNPHTELCQPSDPLEWDAVTRYTKKWETRTGVALHLSGEDSPNFQLPDAEVPPFDRFLTIAGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACELNFEPVWSSRTRVVCGFDPAFTAGGDRCAATFCRFGPNDSGRNLGFYLGTREYTSSVGEVFEESIAIQLIKDCIEFGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTAFSTRSLVGINVDDHSQVINELCSRLYYHKGRKVAVEKKLDMKHRLKKSPDLADSLVYAVQMLRRAGLEFNFEEETESLDIQEIKDWEHRLIHSKHNAEEQAAEDDWGYGGHGTDEDGF
Ga0209777_1000079542	F089761	N/A	MQSFVYMTLRYPESDFTRPSIMLLRSLAHELGLSVGKEPGGYGGLKMERKRLTEALKANLEDARLSDWDRDMISHLE
Ga0209777_100007957	F038058	N/A	MQYTYDNTEKGIVSDFATPQPMQAAQIKGDIPTIRGYKDARTARIKAIGDAGNQHATSRGMANETAMGRGTPFRSDWL
Ga0209777_1000079572	F039455	AGGA	MSIFLNLGRYGDVCSFLPVLKNEYDETGKKPSLIISKDFQDILDGVSYVEKIVFDGPFEDIVGALKFAKDLSEDVTTTQVVGVSEIVVSQVYGNHVGPKIVCDSFQMDAWRLAGKLDLWPKQLPLVFDQRDSKREKKLTKGIPKDKPWIVVSTGGNSSPFQYSELLWEILNHSLPEFHIVDLSKIKAEKFYDLLGIMDHPNTHAMILTDSGPLHLSYASKTPVHAIVTDSPSLWHGTAWRPSYASYTRYRNFPRDVTRILDLIRNPKSRSTIPNVVHVYQRTPWSVGDEKRRNNVAEKSWDGIGWVDLGLDDNCFVRSSLEVIPDERRRIPMIKDMLRLACVGRNDSDVLVLTNTDTCIASNVLQRFEGILPAYAYRHDFKRIDNPIPYDRISAGTKYAGCDLFVMRVGWWRSNHYLFPDMVLGRHSWDRIMRELIKIANGREIENIIYHEWHPSGWEGHGLNRDASNLRNCRLAREWLKERNIPLLELESLNYEGKFKRPNFKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209777_10000795

Overview

Ecosystem & Geography

Associated Families

Sequences