Scaffold Ga0209777_10237128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209777_10237128

Scaffold Ga0209777_10237128

Overview

Basic Information
Taxon OID	3300027896 Open in IMG/M
Scaffold ID	Ga0209777_10237128 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1443
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013725	Metagenome / Metatranscriptome	269	Y
F097175	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_102371282	F013725	AGG	METSHLRPLAKGQVWKTRAADIEIVALGRRLIHYKITRQFGRKRVSAQLSGIAAMANYLTANAARLVKGPSTN
Ga0209777_102371283	F097175	N/A	MAAGLLLQGQEWLYAAAIQTSPNNWGKMKTYHILLGNCEGLLNDFIEALFREVCEGKAVVQCTRTARAGDLIRQACDKEFDLVVQVPHNLFPEVSASTPIGFIGEAIRSIRTIKSKRSAPIVAIVAPGERSKYEPLLLEAGADCVLELPFDGDQLTSAVGRLLQLPARLEHFQSKRWFFAGVLMRGLRRLAQ

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