NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209254_10038516

Scaffold Ga0209254_10038516


Overview

Basic Information
Taxon OID3300027897 Open in IMG/M
Scaffold IDGa0209254_10038516 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4236
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054984Metagenome139Y
F085867Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209254_100385162F085867N/AMSERKPEHPVGTRVPPREKPRPPERPLSAREAGPSRGANKFGAATDGWDAYNDWLDRVRQPAPPSRQAVISKSLGSIASYKSWADKARGAFDKAK
Ga0209254_100385163F054984N/AMERLLKWLDDLDDLTDVFRVQAPAVIITVLLVVVFAAGVGALLLLGPPDLLAAP

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