NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10000057

Scaffold Ga0209668_10000057


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10000057 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43215
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (46.58%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F001964Metagenome610Y
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F007361Metagenome / Metatranscriptome352N
F009134Metagenome322Y
F012040Metagenome / Metatranscriptome284N
F013403Metagenome / Metatranscriptome271Y
F015354Metagenome / Metatranscriptome255Y
F026825Metagenome / Metatranscriptome196N
F028148Metagenome192Y
F029798Metagenome / Metatranscriptome187N
F057903Metagenome / Metatranscriptome135N
F082111Metagenome113N
F086618Metagenome110N
F097206Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209668_1000005712F015354N/AMNPNVSSLIRHGLSALGGFLVAKGLASADQVAEIAGATVTLIGAVWSIWKNKTSAAKTE
Ga0209668_1000005713F026825N/AMTDHHAFIRDISIGVGGPIIGIMGNAMFSDPNLKTASLALGAFAAFLTCVVKLVELYQKFKNRNK
Ga0209668_1000005714F001272N/AMIKIELTTEQANTLLQLIDIAIKAGGFQNAKVGVPLAEIILEAAKQSQVPSAN
Ga0209668_1000005717F029798N/AMANISCEQAASLIAEAYGASCKSPRERNLLEIGLLWEASTLGGMADITADNTVITSDSTIITADMTEFL
Ga0209668_100000572F004664N/AMSANTGYKILNEHMVIPGGWNYRVPETGIEIMGGSLPQLHEFVRNHYIANAIAIPSNLDTLITEYSCLNGADCSFNEIEIPKPQGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQVEATRRASICSTCMYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFTDATENKNLPAHCWKKRPCTDQ
Ga0209668_1000005720F005388N/AMACSNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENQGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYADQGSGAGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWVTAPYEAAFVVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLNTDCVDPLDKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0209668_1000005722F009134AGGAGGMQTVCIEKKAQSLESLSALVRSKLAADAAATLERIDSYDLDGIKDESTREQILGSVAKRSALVFGWSEQGEATSVSINLLGSMPDRSIEVQVNHGNDTETTV
Ga0209668_1000005724F086618N/AMASIQRIENAVNNLINGNLSDARRSARGLTYSEIFNWLTYSVGWSENRSRACADYLKNRIDFQAYCNADR
Ga0209668_1000005725F028148N/AMKTIHQIIREIQFFDPTVRAFDAHDLPQSVRAYLHHNYRMDARLTDDEQQLVEVSFEPFADNLREAFQDDPRPDATRFYLFDDSSLYVRTNAGPELWADAQVFVVERILPAMRLTRLEAELMREIGMDEQVSEVRSDFFGAFARVLNRDCGIPFHESRIHWDAYSRQLGNPAREDAELGGLESGTAEGNRFAADFLATPKTV
Ga0209668_1000005729F002227N/AMKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDDDKHICSITAANGEQILELIIEREEGDRLMQIGEPETLQ
Ga0209668_1000005731F001964GGAGGVSGRGNLFGPAKFKVQISGAIGWSDLKQRVVRFEMIEFASRKEAEKSAKELNPGEYTQGRIRVVPVDMPEDYDVYPVAEKTKTAG
Ga0209668_1000005739F003748N/AMFKVNRKDAGSNYINAEGEYIVTVMKVEETLDAKGREVCKVTFATDEGASIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGVKGSYANFLRSMIGLNLVITVRVEEYDFNGEKKKAYRIKNMKGFTAQTEAEEKPF
Ga0209668_1000005759F097206AGGAGGMRRANRPPSKDELKELLVAAFAAGVVITAAYFMLFIVK
Ga0209668_1000005761F057903GGAGMPMVPDISTTLLKMKYKNCGNSSIQVDVICDDVEIRIGETKWSGIIYTREGKSKVYVRTKAEFKAKFVPIDEKP
Ga0209668_1000005769F007361GGAMSVLFSLEPDCLGLHEQGATDPNWQKSIEGYRNRYRYVADCSTYGYLPKAIVHDSIKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADKWAATNSVMTVGEGELFKVDTLRRIWVHCFHNERAFPEEKAARLVTMNIQRHEPEKVFSIENGSRLVKEVF
Ga0209668_1000005771F005740N/AMKLIVQDIRSTIARAIGVCVDDARVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQETGYGLLGGDNVCVGKQLVDRGTVVSYRDMSGDTNSYIRVYPGDASDVGKTITLQGTDANGQWIRTQSGGVWIDGEKLTLALPYVQSTKKFTTLTGVIREATNTASRLYEYNATTLSETDLAVYDPDETLPQYRRSYLADRCASDDSKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0209668_1000005773F013403N/ASLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLSSGALGARSAITINGDVLYRAVDGVRSFVIARRSFSDYGNTPISSEMVNIIENDQTNLLWASSAVVFDNRLLMTSQPRYNSEGVIHKALSVLDFDLITSMRKKFPPAWAGIWTGLDALQVLKTENAYGDRCFCIARASDSSIQIWEITKTDKFDSNTVEPKKEIEWMFQSRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWIDFAECATTTQCLDLCPLTNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVMISIIGYCRIKSLRVHAYDVQESSVGECRSVYPACTPLDVCDVNPLTYSSESFITLA
Ga0209668_100000578F012040N/ALTKTRSNQEKQDLLSLPEVNISEWQTEGQQAELAQILKNPILRMAIRIVAESMPVPMPSANSKESDIIFAAGVTAGYAHCLENLRKLAVIETQKEPEATFDKQY
Ga0209668_100000579F082111N/AMDEPLNSPLVNSAQPPDFGSSFIDAFKANGIEDAAAADEGASTAAQVTEDPKQKKTASSKLSKSEMDIERMFGTKKTETAPVTEDAAANADADIPESIKSTKAADAFRKIKEEKAQLAKQLEELKLGKSSTPDFESKLKTLQEERDALSERVRLLDIERHPEFVKKYESKINGVFDSVKNLVGTDGERLVGLLKSPENDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERTSEMSEAKSDYDAILSRYQQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNSELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYSQVEVNKRLQAELAKYRGSEPGVTSRATTGGSRPSNTNSSKSEDFVASVMKSLGR
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