NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10000112

Scaffold Ga0209668_10000112


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10000112 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32365
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (55.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F004130Metagenome / Metatranscriptome451Y
F099220Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209668_1000011210F004130N/AMHSAAGFLDAFVQDEVKCRCLDEEDFGAPLDNEQNDVPLYDMYNRGLVACEQGLERNPLNLEGQRPGMTGYIPSMEQGLAMGASPKPRTLVLELEEPDEKERMLSAKRRGLLR
Ga0209668_100001124F000973AGGAMQYGLRKSLEDIAYELKGIKNILGSMWHSRYSTGETDALNPEAFADEYISTEECGKRLGVSDQTIRNWISIGRKTPDKGWVEGIHYVNVSPDIHRKAVLRIPWNRLIQSFAKNENLDLKNLRAHYDQYKNNRGFLE
Ga0209668_1000011242F099220GAGMSFSTSTPGRNTRTKAQLMAEGMSDAEAQQLVDANVARQYGGGMSAAELQDFESLIGRLEGSKMRQAAQSNRARQRDTFAGGLASMMGNF
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