Scaffold Ga0209668

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10000678 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209668_10000678 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14113
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14113

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025680	Metagenome	200	N
F057894	Metagenome	135	N
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000067811	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGTLPADDTEYIVWLQHNATKKIMQFTATTDGDGYINIEGIQLDPLQGYTIWATIDGVQQDITVDLEVYKCLSFSAASVGQSPVVIP
Ga0209668_1000067816	F057894	N/A	WRSGYMRQQDDTFTGHLTPIGSVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSDAGYKTADVIIYNKVVRLKLTEDDIKRSKTLSL
Ga0209668_100006783	F070850	GGAG	MTEEATQTTQSITPSTGVVLLAFGKIQYYWAAFNLAFSIRKHSPNVRITVLFDDVLKAVSQCPEIVNYVEHFADINPADIYTNNKLDPGKVKVNLYKYLPYERNLYLDVDAIALKDIQPMIDELIQSGKDYVSHTVGYHTIDKGRDFKEMQWAWADKMWSHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIAIKDLRMKWGGGQPDELYMNVALAICGIDPALKSYTKNSGSEGGMIHFAMTRGLSFQDITHNYYFQSYYGGAGFTPRFYIDWLDRMLSADFRAIGKRHIYLISRIAQNKYADGKR
Ga0209668_100006789	F025680	N/A	MKYIKELKGRLRSLWGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILTEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWIIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLSMSPEDFQILWEYNLQQQRNLKDSLLRLSSHRESGRRKQETT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209668_10000678

Overview

Ecosystem & Geography

Associated Families

Sequences