Scaffold Ga0209668_10010456

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209668_10010456

Scaffold Ga0209668_10010456

Overview

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10010456 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4345
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013634	Metagenome / Metatranscriptome	269	Y
F031456	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100104568	F013634	AGTAG	MCNSDNQKTMAIQIAPLVGAGLGALQQSKIEKALAGEKTYTRPKTIFGKLIGGVSGRTAAAEASASTKTSPLSDSVLKSLQPTANTLDPNMRQSFPLTGGVSFGGEATRKTYLPFAIVAAIIAAFYFMRRKGGRRRR
Ga0209668_100104569	F031456	N/A	MALIGSFPATGSAVFNLDFLPEKLLVGSTEAADQQLSNFSVVTSGVQLMSITAIARLTALAKFDSGAVLPNNPGDPTTASYIKLATGRINKATTIQGTNPGAAVDVFAASTCISNVARRAVEQSINPSANATFDNFEALFFDGFNVLRAQITFANGYTDEYTVRELRALYANNHVSDAAGNLEGLICIDADSGAGLISQVVLFNGGTGTTVVLKTDYVQL

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