Scaffold Ga0209253_10000023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209253_10000023

Scaffold Ga0209253_10000023

Overview

Basic Information
Taxon OID	3300027900 Open in IMG/M
Scaffold ID	Ga0209253_10000023 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	95178
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (78.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045837	Metagenome	152	Y
F048396	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_1000002315	F045837	GGAGG	MPYRLRWEGHGVYRRFFGVVSSTEFREAYEEMTGDLRYECTRYIISDYLEAEPGPDLTDTFVGRVEQLARLQYDCGPDIVHATVAGGDPMLAHVRYFESLPLAPYPEATFATVEDARGWIARNPRPAWRSASPQAPAVTMPRG
Ga0209253_1000002373	F048396	GGAG	VYSRYYGNVTGEDMRRHIEEVCTDDRFEQHRYNILDFSDATDFSPTERELLINSGVLIGAAFTNHQVLIAAVVTRESVRAALERFHALGVSPYEAKIFPTVAEARKWIAESGFTSGRYSI

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