Scaffold Ga0209253_10311027

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209253_10311027

Scaffold Ga0209253_10311027

Overview

Basic Information
Taxon OID	3300027900 Open in IMG/M
Scaffold ID	Ga0209253_10311027 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1220
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031076	Metagenome	183	Y
F034568	Metagenome	174	Y
F041003	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_103110274	F031076	N/A	MKPIIVIMCLLLSGCFGTELIRISGIGIKTGDLITVPHKIETLTKDKNDK
Ga0209253_103110275	F041003	GGA	MKAWTPPTDYLDPPKPPRHYKYVWLRFDIKTKKFKYPLVKHKQLKNKKRFPFIYIKHYGKCVGIEGLTLAKIKI
Ga0209253_103110276	F034568	N/A	NMNVEDYGVKKSWDGWRTFAYVRDGTPMGLMPITWANELFKTKQQAKTFINDLATKNGWK

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