NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209048_10322263

Scaffold Ga0209048_10322263


Overview

Basic Information
Taxon OID3300027902 Open in IMG/M
Scaffold IDGa0209048_10322263 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025283Metagenome / Metatranscriptome202Y
F032633Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209048_103222631F032633N/AVPYENEWGEPFFSQSERDQLSRDFMPWERDCRMKGIPLVGKGVVFPIFDWPTYKGTDVDLRNNEKLERLISFDLGIKNDPTVISFFFRDPVQETIYLHRQVKIPSGETPDEYVHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDTYGLNCIQGAILNPVNDQGKVTNHKAYGINIMRLGMERGTLMINESCIEFLDEARNYAIDEHGRFSDPDDHIDSARIGILALIQGHGESVVSRANTFALRRFTPIEGKIQRI
Ga0209048_103222632F025283AGGAMLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPD
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