NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209488_10080634

Scaffold Ga0209488_10080634


Overview

Basic Information
Taxon OID3300027903 Open in IMG/M
Scaffold IDGa0209488_10080634 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2421
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011234Metagenome / Metatranscriptome293Y
F017836Metagenome / Metatranscriptome238Y
F021325Metagenome / Metatranscriptome219N

Sequences

Protein IDFamilyRBSSequence
Ga0209488_100806341F021325GGAGGMQFDRIVEILGLWPHYVVAGLAVPIVVGVLARKVVLTLFSALLSLLSLTLLFDPASIGPALVVASAMGSFLIALESLIERRRITALNTQIGELTDRLVTLEAAESRRLAIEVRKKRKTFRRTSGTADSLQSPPLSVVRLSEFPPTRET
Ga0209488_100806342F011234GAGGMSLQEAASQVSRTSQVGRRATKFCPANVQKIKDWVAEGISREEIAVLLDVPLGSLQVTCSRLGISLRRRHVLNGNASDSRVMSGNGTGHDIPNHPPMIGHMRVDGQFQISLERGGTRRATALPLTAHDIAQLALAAAARNVGMTQLLTEVVTMAIKKGMIEEILREPSPEPAPQAAPESP
Ga0209488_100806343F017836AGGAGGVRDFAFKVNLVAVVRVRADDESVARKVVPTVLGPPGPVEIRLVNENHAAMAHNATVTDVDFSIASVKPLKAGSR
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