Scaffold Ga0209488_10113572

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209488_10113572

Scaffold Ga0209488_10113572

Overview

Basic Information
Taxon OID	3300027903 Open in IMG/M
Scaffold ID	Ga0209488_10113572 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2036
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016578	Metagenome / Metatranscriptome	246	Y
F033935	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209488_101135721	F033935	N/A	GNNGGQFMAVTLPDGTQMGNPNAAPGANAGAGPANQ
Ga0209488_101135723	F016578	GAG	MRPIIIILALFFAADPAAAQSWKEYAYPTDFFSVAFPADPKVETATYQAADGHPAEARVYSVSQDGGVFRMTVADLRDPATQESAVLDHAVRTLSQGSEIKVDIPHRISRVYGRQLSIAAPDGSYSSVAVFYHKQRLYQIEGTVLPSATNATSDAIRFQQSLAFTDDSTNR

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