NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209737_10286119

Scaffold Ga0209737_10286119


Overview

Basic Information
Taxon OID3300027904 Open in IMG/M
Scaffold IDGa0209737_10286119 Open in IMG/M
Source Dataset NameCubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1715
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005367Metagenome / Metatranscriptome403Y

Sequences

Protein IDFamilyRBSSequence
Ga0209737_102861193F005367AGGAGGMTGGPDPERAPHPSAGAPPSRQDVLGLGERERDALLAWVGENLTVVRRSASGQRPMYYILGIGFVVGLAAHAGGFLLKTSATTEPLSLVADLLYALGWALWTSVIVVMFVEIWPEAKKRQYQQALDAYEAAINRQAGAASGQGAAPEGAEDA
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