 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027905 Open in IMG/M |
| Scaffold ID | Ga0209415_10000729 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61679 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (72.73%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003400 | Metagenome / Metatranscriptome | 489 | Y |
| F025334 | Metagenome / Metatranscriptome | 202 | Y |
| F099579 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209415_100007291 | F099579 | N/A | PYWTGTPNQLYDMFAPVIPIIRNHVPGAKVSTPPVCGGHTSWITSWMTLENTYGRLSDYYGIHVYLLGYTPEVRMGMVQNMLDTKNANGWATTPWMNTETGYETVTFTCSTQYTVEDCSGQLVRWHVLQYAYQGGGGGAYNVGWFTWKSFSSGGYDTYYYTMMQWLTGASFTTSCTNQGTVWSCPLTEASGNMALIVWDTAGNSQYTPASEYVDYKYFNGTYGGATEAMSAGQGTTIGVVPIMFESAQ |
| Ga0209415_1000072918 | F003400 | N/A | VRTDILPLCDKHYRTMEFLLAPFSVNYSVEFFRCTDKFCQRCFSESLGYVTPRRDEPPVVSNDQPACDKHGRPMFISSLDRQRNVLRYVCPESGCRETALRG |
| Ga0209415_100007293 | F025334 | AGGGGG | MSLKIWAIGAVILSAPSFAKACSSGDCQQGVIAGPYTAAQVAESTSISTSVFPVCLSCTGGSWTGDQIEGIDAQQNIGSQYQFYDAAYDIDANIAVGPTVSGQNAQVLEWVNGQFVQAFDKVSGQPIFTFTGGTTAVPRNVAGLWSSSTQAECQNSSGNVQIIYDRLDNAFVISQRVVYMAGGIHQSAWCIAASSGSDLSSPNTKWYAYEYKMASVIPCVPSSNNCTKGPYYYYFPDWPRIGTWSNGFYITFDLQDPTVHYTEAGFEACQLDRADITQGKASNPMTCYTYTVPSTQRPSLIHSVDVADIDSATGPLGGEPEHFLSVVNPSNAQQGLKGRNWCTSQTTPCTSNQLALFKWGTKGFTGPTFLAVNPYTPGCYNTSKAGQEGDTFCVPEPSTNTNDIGGYGQPTCGDYHTPCVDSLGDRMANRLTYNHLSSSSGPNGQYLTASHVVMESASNQRTGIRYYILTLSNGTASVLVNSGGASGPPDLQDPNGVLYYFMPSAALDQNGNLGIAYTTSGPYCSQCQSPNEPAINFDVLPWNSTSFDVPTLIVQGTGDEENTNRWGEYAATVIDSSDNLTYYGVGEYFNTSQTGTTNCGQPASNCHTWQTRLFRGQF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |