NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10002944

Scaffold Ga0209415_10002944


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10002944 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31839
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (46.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000414Metagenome / Metatranscriptome1169Y
F007540Metagenome / Metatranscriptome349Y
F038799Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1000294418F000414AGGAGMSAPSRRPEIRRRRTRKDKIVQLRKRLAAAKTDADRTRLTAKLHKLAIASPGQPLLK
Ga0209415_1000294427F007540N/AMKLAGLLLLVAGWVIVLGALLLLASAAPRAAFALAGIGVQVLGLVLTARAHRIFEGEDRLDTDLDTERG
Ga0209415_100029445F038799N/AVQGQFQADGSLMAAGVEVITTAQSFVSGRVLQVVNNSSGQAQEVTMWVGETGADMVADVDTIQTIDISQVSMWDICFLDGPIANALFNDTSIEVGQRVFIGGSFVNPTFTPTMISLRRQGMYGLFVPGSVTVNNGNAGFFQLSNNGLVGYSVGGPVTVNTFNFTYFYNLTGLSQLQTTTTNIPLVTRGLLLKDPVSGNIEFYAGLVAEPPQPTGH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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