NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10004303

Scaffold Ga0209415_10004303


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10004303 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26178
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012826Metagenome / Metatranscriptome277Y
F073826Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1000430313F073826GAGMGNWYTNVSVKGAQQSEVVAALDELARRAYVTPEVSGWIVVYDQQTDDFDLGILESLALTLSTRLSCTTLASCNADDDVLWLALYENGNLSTRYTSSRKAFEDGDEFPELPETAQVLTRVFEKPQAADQVLGVLRKSHGFLGLLGLYLKIRLAYVVEVQRHLDLSNLLAMPRAAVGLGYTYVNKGETPEGMNREALRRTMVG
Ga0209415_1000430321F012826GAGMTVRAHLPAFELFHPFRNTSVRTGLYVGTVLSIALGAWVIVANRVPVLERFALARNLAAVTVLGLIALIPVLRFWRMPGYLLASSLVAWVTLSLFYRVLCMYFARLAERFSAVQVFVLGAVLYMLVVTLSWIWTIIRRARASAISHPNHHPNHHPS

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