NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10007593

Scaffold Ga0209415_10007593


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10007593 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18911
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F072981Metagenome120Y
F095031Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1000759314F000092GAGVKQHLQRQSGVANVEVSLIDGKVNVTPKEDGQIEPAQLLKATYDSGVTVAELDMTASGTIVKDTSGNLSLQIKPNQSFVISPSELSKGLEPLVGLATVVTVRGQLYKKPVGKQKKADNSAPLKLLILEVKKE
Ga0209415_1000759320F095031GAGMKGSATLPLFVIAATLTAFGQKPSLAAPSSADTGTGIQRACSTALDLNYLHPRKVKTQREAFDLGYCLGLIKGVYENLNGEVDFCPTDSVSIRKVTELTVSFVQAHPDLKDKDSADIVRWALTDAFPCHPADAKSDTHTNTEKH
Ga0209415_1000759328F072981AGGAMRTAHSEDRLVRIEIEHGAVIADHEGRFWRVLEVSDEGLLLLMLPERQDIVHTRTLKWRDFVECGYDLKFP
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