NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10025293

Scaffold Ga0209415_10025293


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10025293 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8882
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010410Metagenome / Metatranscriptome304Y
F055024Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_100252931F055024N/AHPIFRTDIRGFMIQMQLDHPESAKSKTVFLNRKPLFF
Ga0209415_100252932F010410AGGAGMPCAEITPKATPKVSPELALRTFKGRFGASFTLAMLLVPAAFAADTNDADAKNKNKDQQAFCRYVTEQAAAQRDLLMVPNAVAGITQPNTGLPMQAVWGVSGSLAGVRKGVLTMDAARKNCELYSATTSTQQDIQYALPNLEKQALQHRVELIQQASDNLDALSLATTRMVDAQNMTRPMAFALETTKIKLDADRSDTQTKIVSLYTPPLSGRPVKELVAEKQGREVNEQKALDKLNRQNNWDVALSVGEHQQIDPWVDSRGAYGEVSISYNLASHTINKHLDRAADAYDDWKKVQEGDVVRNAEILKQQVVDGISVQAGRLKALQEQQKQIEGNLQLVGSADTTAALDFHNQLTTARLLLQIEVGDATFRLDQLREFLQKNF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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