NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10045846

Scaffold Ga0209415_10045846


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10045846 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5766
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F032091Metagenome / Metatranscriptome181Y
F038951Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_100458461F032091N/AVQYQHSDLFHEILETVPTMTRERASLVLDYGHQLVEHIWLWTDNIEKYYQVEGNAVPRAPFDVQVD
Ga0209415_100458463F007671GAGGMRRLFQRAGGAPIEKPIDIRRVLDNTQYLDDWRANYRIQSVRSSLHAERITCIDGAVLSYGLLELLFPDVKRRLLAIHRCDPKTGEECGHCVALFWDETGKVGSFSKSSYKGLGHRDPVYVDETAVATTYAEAYVAMQFQPLYFGVSRLEEVAPDLDWRFNKEDLNAISDRLQATYEYGFAVE
Ga0209415_100458467F038951GAGMAGDSSETTTARVERLVREFSQGLPAGRPLDGKLSLKNDLAIESLSLVSLTLRLGDELGVDVVEMGLELGAVETLGDLVKVADTISRAKQ
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