NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10092527

Scaffold Ga0209415_10092527


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10092527 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3379
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000373Metagenome / Metatranscriptome1218Y
F010287Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_100925273F000373GGAGMSELDVIVIHVRAEQAAEYERLFAERELPRWREYKARGAFISARIFRAAFGTDGRQDIAKYVIAVEVPSHAEHSEHDADPGFQEFNRLADAFQPENPLVYGGQVLHAV
Ga0209415_100925275F010287N/AMSVIRISRPKRDWSVSLATVLPTALLVRLFRLHWNYTVVLDHHSAGKIGNEQVRVFNVDPGEHRLRMRFVLLRRSKEMRMSLKEGEEREFVSGSNGFGWPTLREASPEDLAEIRGSSISEPPKPGDPVSPN
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