NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10335404

Scaffold Ga0209415_10335404


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10335404 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F012935Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_103354042F006575GGAGMTESPYLSLRQAVRPAILAHWLLAGDQERAGKLAAECEDLLFLTRELLKAAGRVRILGGPVPASDGPDPAERAGDRHAQLLDAYAEAGLLWAKVVGCSVALAEALIDRGEWDDVRRLADFLAGAGEESAAADLRIQLGKAVFQMHREQLQAISNTMPPAAIGKAIDALRAVLREVHEDFPDRNREVNRFLPPLASAIHAIMKDQDVDLPLTSRVEHIATGGVAKYPDIVTMSLDELAAEFEGTCS
Ga0209415_103354043F012935N/AQPERFFLIAGMHRWHELLAEGDYGRPSEISAQLVRLADQGPDAGLHVVAWADGYATAERALRRAGIGFFGLRAVLRVLSPAESDSLLGVSAAASLDDDRALFRDTEWPAEQVEKFKPYSTASLYAFAQEMFRSPA
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