NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10000394

Scaffold Ga0209006_10000394


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10000394 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43001
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F003314Metagenome / Metatranscriptome494Y
F103606Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_100003942F103606AGGLGSRLFEVPDIHLRGTNTRRRFRAALRWVARLVLVSIVGSWLFLYIDSVYQRRRAESMFADLISLDFSTAGFVEVRDIMIRYGGRAMQSDLQPRLPDPGDPMIDNHGNVTFPGRPWPMCTPRGCIFLLQIMTRLPRIPLLDGKARFFYRVLPYIGVRSWVVYALFEVRNGKLDRSHTGVGEYMMERVDYNAYRQLVPFGYAVETRRDAASFEYGPCSSQDYQVYVSHGVFKFPGNTLATCVVQSAGIPVKRAFDVHLRCLNSLFRSCRFDELAPSAWADRSANGGTGTPDRRR
Ga0209006_1000039430F003314N/AMTTKTIPEYLEDERQKDRDAHLRMDEETARILPLNRGHHRAAKQPRLELPSVVKAVPKARKTAAAVPKKSRIAQKKATKSRMVA
Ga0209006_100003946F000238GAGMLEAMTLSTPTRSPRWYGVPVRVLLVTFIGTLLCFALSLLLAILGTVIVSRFRGAHPDMRIAYRLIALPAALAAGAAILITMLIMEVRRYRQVKALSAIERMN
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