NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10002217

Scaffold Ga0209006_10002217


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10002217 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17701
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F019446Metagenome / Metatranscriptome229Y
F033134Metagenome178Y
F034658Metagenome / Metatranscriptome174Y
F037842Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000221717F007233GGAGMATRKQEQQQRQLNLDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDDPVWRPKD
Ga0209006_1000221718F033134AGGAMKQEQQSNQLITFSSLHIEVLGPRELRNSQQAIRGVTDFLHGVELDVEKLLRERAEMSPILEGFRLRFG
Ga0209006_1000221719F037842AGGAGGLKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKPRRVMRRVASR
Ga0209006_1000221726F019446AGAAGVLGKERSPNWSRSKSNERQLDLRKYGTTVTDAEKQFLENMPGEIKEVLRWHADAQSRGQVSQSIADFAGRFLGGMYEDGAVLPTNLSASTPKVLALVLLQHRTSPRTTGAWLNLGFALRRVALYRTQDPEETNRARLQSAIHVFDRAIQLDPDNTGKNIRAWTGMSFAYHMLAMYQKELECCAKALESDRSDLKLWLKYSFALKSAGRDDEALSTMNDAYDAYIQAGRPEELREVFADVQSATRRPCRERMAQ
Ga0209006_1000221727F034658GAGGMKSVSGIRRTRLAASKVHRHLVKEARRTVQKLGWQVPEHGISPTLVGAIPLPFPVPDSFEAAFGYRGNLRFVQFGYVAGSRQFGYSDGGDDLPSDASLWSWFLHHPVI
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