NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10005061

Scaffold Ga0209006_10005061


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10005061 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11979
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F019893Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000506116F019893GGAGMQMKLPAILLLLLSLQVRVFTLPAVAQKGAPVSHSPEITLHSSSNLVLVDVIALNARSGLPNKTLTRDDFRIFDNGQPVSITTFDSGAKFTTRPLALWFVVQCNMRGYEAKGSGLFAGQISLLKPPLKDLEKPDTVAVAHWCDDGQSKLDLLPTSDIDEAATTLEQVLVPMPDTKDHDRKGELALQKTLQLIIDATHSLVPEPLPVVIFLYGDYSGTDRSEADHFIDELLKTSAVAYGLRDRRSPRIWLIGEQGAVANYIATQTGGQHLRVTPKTYAKGLEEILQQLRCRYELGFEPEALDGKRHKLRVEMAAAAKNGTKKCA
Ga0209006_100050616F000281AGGAVKLREEIAQISEANRLYLHGGKKKIPGAAGDHERRLQRLQEILDELVALTDWKKL
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