NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10009020

Scaffold Ga0209006_10009020


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10009020 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9008
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044949Metagenome153Y
F047202Metagenome / Metatranscriptome150Y
F055902Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000902010F047202GGAMKASKQRSDLDIDTPPALNLGETDFSSIVAAGGGKYVGVLKEIPNKMEPIVLFNSPRTRTTLGIRISSLTAEAVREHLAESDAAFAEAGSK
Ga0209006_1000902011F044949AGGCGGMTNASGAGILLEYRFRDSFCFHIRLAELLGTEMPTLIERLKIFHGEIISVSEPRFAGKVRQLP
Ga0209006_100090208F055902AGGAGMKATSQSIGKNLMTAVAAFAFFMAMAPVASAKHRASNSMQQPATIIAHLPLTGASVGELILQQRGNKQYLYLEQTSKDGFAIVDVTRPDQPNVLRSEAWPNEASAGRLQMVAGRLALAEAPDSGSTETISRTETLTVLDLSDPANPRTILTFSGVTSTLADDARNLVYVTNSEGLWILKHQPEQSMSSAARGCSSEDASNDVASCQ
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