NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209006_10019792

Scaffold Ga0209006_10019792


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10019792 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6100
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014775Metagenome / Metatranscriptome260Y
F017683Metagenome / Metatranscriptome239Y
F065012Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_100197923F014775AGGAGMLRIYIENIGEMAVIECEGRIVRSEDAFKLRNAVNLQSDARIIVLDLSEVSAIAGGGLGMLVFLQQWAYDHDIRLKLFNPRLSVRDRLEHASSMREFDFATLDEMMALLARTDDRYEQAA
Ga0209006_100197925F065012AGGAGMKNAYEVLQRKEADLARVRHEIESLKIVASLLSDELPSEELTKKPTRSAEEGLDPDSEKATGTDGMFSSMNSAPRSRFWNPLKWQK
Ga0209006_100197927F017683GGAGMKFLKQLFGQGCLHRFSWPRVDAGGHHYQICSHCGTAYGYDWTLMKRTERLLVTDLRA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.