NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10024460

Scaffold Ga0209006_10024460


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10024460 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5469
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018790Metagenome / Metatranscriptome233Y
F019713Metagenome / Metatranscriptome228Y
F033529Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1002446010F018790GGAMARVIEFYVPKSFRSPFVRAAQLQSGEVIEFCSKAKKPVATRPAGGVLGWLLGVTDSDLAVGID
Ga0209006_100244604F033529AGGVPETKHIKRILVLALLFASVVDFILDSARFDLVVMIAALAIFLSGGLRSP
Ga0209006_100244608F019713AGGAGMPHAVSQISDDIISGILNWVCPECGGPMGGRTEEFKCQGACRTDWRDVWEHGVGKPGKKANSPMAQGKQFKI
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