NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10078943

Scaffold Ga0209006_10078943


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10078943 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2929
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F025365Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_100789432F025365GGAGGMPKKTKPKAVCDRDTPLTPITAMERRKLDKSIKKKYDRFRRRYPEIHGKVVDFITHSIEDGTLYFSVRFKDKTDFSLRYACDMFVVGADFCDFKTGNFEMIREYMRPIPR
Ga0209006_100789433F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSLAGLERRRSIINLQFMLEMRKLEENDESYFEEEFNVWLSDEPLTNDEICQLMRGVERERKLEGKPPLVQFLTRSKRPKKTTKKSEGHSSRKVNGSPTPASGVKSTEPEDAHA
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