NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10159697

Scaffold Ga0209006_10159697


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10159697 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1975
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y
F029532Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_101596971F029532N/ASITGDSAAVFFEEDSDPQARLLGAYAEAGLLWAKVVGSTIALARALLDRGDWDEVRRLASFLAGAGEGGTAADLKSQLGKAVWAAYREPLQGVSSTMPPAAVGTAIDALRAVLAEVPDDVPDRNRQVNRFLPPLAASVYAIMREQGVDIPYSSRVEHIAAGGVAKYPDIVELSLDEIAAEFDGLCNRPGDGLGNRPGNG
Ga0209006_101596973F014996GGAVTTVHADIDALKRLHEALVRYRYAQRGVAERAGDEIEATRASLADKASRWAARLEQDQADLDACRAGRAETADCSGLVWAVEQASERLERIHRWQQRVDEAAGEFGVTAGGFRDLLDNDLPRAESQLLAGIASLEAARRVQADVP
Ga0209006_101596974F013663AGGMPTRPDRDGEERVRVLGAAWEEAAGYWQDEVARHFETDHWTPLAERSRAYLEALRALLDLLETANRDTEF
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