NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10020398

Scaffold Ga0209382_10020398


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10020398 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8061
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002124Metagenome / Metatranscriptome591Y
F003512Metagenome / Metatranscriptome482Y

Sequences

Protein IDFamilyRBSSequence
Ga0209382_100203986F003512GGAMSNQSAAAHHLATPFAGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREARDREELLSASVNRLMESRNHWRREAERLRALITQVPPWSLFWWHCVDAFKAWRKPTDLHCA
Ga0209382_100203988F002124GGAMADQNEAKTKTIGYLPIEKVQTLKGWDEYLDKSTQLSVLRTEAQKAKNAVRDALKERLNDYGDIDFVGEGDRIRVFRVFRKQQARRTRSLDLSASFREQPLDGKAETNGQCNDEAVCEESDDATPNANPITEDVAATLDPVTERLMAIMREKGQR
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