NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10175543

Scaffold Ga0209382_10175543


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10175543 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2469
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000037Metagenome / Metatranscriptome4230Y
F029577Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0209382_101755432F029577GGAGMRLVVVALMLLIAGATHAAAQQYQLFPASVAATNLQVEHQAVLVNTATGDIYTCIGTLALEKNGPRLSGLGCQKGEIKAGSAPKGTVVLTVGAHIPPGPFTGVWHVDQANGDVSLCAKIPRGIWWYCGVAHLPH
Ga0209382_101755433F000037N/AMSTLDEQGCNTSGCPMEKDYLILKRASANRASGEWNEDDFDVLADGAVVGRIFKANAAPVGSPWMWTLTFGHHEDRTPTHGYEATREDAMAAFAKSWRRA
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