Scaffold Ga0209382_10428454

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209382_10428454

Scaffold Ga0209382_10428454

Overview

Basic Information
Taxon OID	3300027909 Open in IMG/M
Scaffold ID	Ga0209382_10428454 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1469
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069462	Metagenome	124	Y
F103749	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_104284541	F103749	AGGA	MANHLVIDADGHCNEPDSELAKWMPKEIAHLAPNRVTDSSGYSHLMIEGRLAGRRRWGGGADRG
Ga0209382_104284542	F069462	GGAG	MKKIFLAVVLTLSLAGSAQAAWLLWKHSWVTRRVEGKPRGLSVEGDVDKWELLNAVDLRNECVAMLRVEHRKTWDGLTAVYPNEPVEQSIVADGISASVSTGAEKSGGSSARTTQLYYEYTFWCLPAGVDPKITRSVPERK

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