NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_11105840

Scaffold Ga0209382_11105840


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_11105840 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)818
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061056Metagenome / Metatranscriptome132Y
F092376Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209382_111058402F061056GAGMTAVLILKRGNLSRRGGQWRDDDFDVLENGVVVGRIFCLDAVGPQGRPWMWASGHSAAAVKRAAHGYEPTREAAMQAFAKSWRRS
Ga0209382_111058403F092376AGGAGMPTHLPTREPTKAALLIQCGRYIVGIGILLVALALFGLRLVRASHAIARLGERIGGGPPVFS

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