NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209698_10000264

Scaffold Ga0209698_10000264


Overview

Basic Information
Taxon OID3300027911 Open in IMG/M
Scaffold IDGa0209698_10000264 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57999
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (58.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005064Metagenome / Metatranscriptome413Y
F013245Metagenome / Metatranscriptome273Y
F067062Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209698_1000026414F067062AGGMLIFEQLVARGLMALDPRRNVLAFNLPVIAKFPRIRQQKIEEFKWLVGEWAFENHVRATPTTPAYVDTYFYTYELADNGSRYTVSGHGAKARPYLTFDPFSNRWMMTFTEGLFGVLQSSGWQGDIIVFAGALTMLGVDCELRQTITKKSQDEFHILNEEKLPDGSWRETDEFFCRRKQP
Ga0209698_1000026442F013245GGAGGMSGKRLCFAVLAVATILAVSAVAQDEKNEIGGLFGRTFLSDQGIQNATYFDPIIHSGKGLTFQGEYARRFWVTAVYSVSAEGLFVYNWDVDLNAGQYGNSVVPSDLKKMFITPAARLNLFPTTAVSPWVSFGAGFGHISENSQLIYGGLNPGKSTTSAVIEAGFGLDVKVWKKLSIRGGVRDFWAGQPDFPLAPTGKTRQHNYIVTGGAFWRF
Ga0209698_1000026456F005064N/AAVASIRTINSAEVTYNSTYPTVGFAPALANLGGAIGAACVPAQATACLIDAVLSNNGNPGGSGKSGYLFTTGAGTVSGGVNVGYTVAAVPITINQTGLRAFCAEEDAVVRVDPAGVCSLTEPGVLTFNPLNQ

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