NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209698_10012196

Scaffold Ga0209698_10012196


Overview

Basic Information
Taxon OID3300027911 Open in IMG/M
Scaffold IDGa0209698_10012196 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8552
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004934Metagenome / Metatranscriptome418Y
F025538Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209698_100121961F004934AGGAGMSSLNAKDRVSLCQFTFSDGRRCRSPRFGNHPRLCPDHARKEARARARQSLGKDLAHYFSGDYLSACDLSTAMGC
Ga0209698_100121963F025538N/AMGTRCRPTEAPLNFRKILSVCGWLAALSVSAGANAAADEPKPTPENTIHIQLAAPVPPQKFAKPPKFFISEVIDRSGNPQPMLVLKDRGGVFLDRQPTQITKETLEESLKAADLVAADAASADLVLQIYVFHFGLAHGSGLDFFGKVEFSVMVKNLKTEESQRIQAAGTSIANGAVRKKNLQKNVQANIEGALEDAVRNLLRGTQLREAVAALLKNSAGPPAAPPGGEMAFVYANGDEGKRLKSKVGER
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