Scaffold Ga0209536

Basic Information
Taxon OID	3300027917 Open in IMG/M
Scaffold ID	Ga0209536_100145395 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027917 Open in IMG/M

Scaffold ID

Ga0209536_100145395 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2997
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2997

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F006619	Metagenome / Metatranscriptome	368	Y
F038646	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1001453951	F006619	N/A	TGVSPVAAEPYCSCGSFQRQLLNVSEFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDAISDGRFVLLYTNNGAQAPLSHWRAYKPKEVFTQHQAWDLFFNMMEAGYVPFPGIALPQLKSALKK
Ga0209536_1001453952	F038646	N/A	MTDDLLEYARQLVANQPMKPPEHHSYHLDIPIDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISRRITAKAFNDPSWVCKLDLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQEDFILTALRSACESVLSDHGN
Ga0209536_1001453953	F002738	N/A	MAIDTYGLSTEQYTEFFQKNLRLAAKLYLDACNIMSSEGVGNADFKTVLDLYQDAMYAANDDCRRYQKSNNPEVLKENDVYGIVPSHQEIIEVVETLLKYTEALDAKLQALTDYVSNLATVTTAGLEGIATTLDDKVD
Ga0209536_1001453955	F001018	N/A	MAQITQAKLKDLNVIKLYEHYAALEKSLPLLTPESQELAKAELEACANIRSEKIDRIYYAMASHEDVLERIKKENDLIAQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCIAEEITTTKRVVLRSMSGEVLSERTEPKTTTKTVPNLDAIRSAYQEGQQLPSGVEVVQEYAVRSKRIFSEPKLDLVSSEYPREFLPEDSGAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209536_100145395

Overview

Ecosystem & Geography

Associated Families

Sequences