NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100183491

Scaffold Ga0209536_100183491


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100183491 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2632
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005089Metagenome / Metatranscriptome412Y
F021974Metagenome / Metatranscriptome216Y
F055691Metagenome / Metatranscriptome138Y
F058109Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1001834911F021974N/ANTNIVSEIYSYHTDWKEGKVNQMWIEQSGDENKGYSYVAVAHNPRNGKTMEMSNPRTSYQETLKWVRGWCGTFCTLPA
Ga0209536_1001834915F055691N/AMMTYTSPLTSKVYEIVETSHTRNAWDSEGNLTPYVQSVFDIYYEGRKVQFALSQDRIAASVAHYENPGPDLGSRFD
Ga0209536_1001834917F058109N/AMIETNFYILNGEQYQEYYTEAQKLGISIDYYLDEFCDTEGPYIHND
Ga0209536_1001834918F005089N/AMSTNDLLDSIKLSEQLALENYQQRNGVVDYRLPGVCNHYFAKYDLNGTRDGEVCLTCKVSKTVKGQLRYTFQVDGKRIAEKQIAAEFNALGAFTY
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