Scaffold Ga0209536_100382970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209536_100382970

Scaffold Ga0209536_100382970

Overview

Basic Information
Taxon OID	3300027917 Open in IMG/M
Scaffold ID	Ga0209536_100382970 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1758
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F051066	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1003829701	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDEEKHICSIVAANGEQILELIIEREQGDRLIQTCEPEDAP
Ga0209536_1003829704	F001964	AGGAGG	MSRNLFAPPKFKVQINGSLGWADLKEKVVMYKTLEYPTRKEAESVARELNPGEFTQGRIRVVPVEMAEDYDVYPTPERSKP
Ga0209536_1003829705	F051066	GAGG	MARRRTTASDAGNPPYPKLTGLDRYRNDPNADRYEYGRAVLAAMRALNRRELLRAKPHPCPCASGVWDSDGHAILAAVGRQNRRI

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