NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100961844

Scaffold Ga0209536_100961844


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100961844 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005087Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1009618442F005087N/AYLNVKGLSKKGFFFSKSFIISLAFLVFSAKEALSIFLFRSINSTFPLTLLMLPSQSTSEICASVQLAELKMRTIELPALRTNPYGDDPTLLVTNSQGLAPIPADMNSPILFFQETPNSSVPPGSNAASMGPWIIYDRVGDREIIRRRMIDQLYVKPFGVPRVIRASFSEVGPNYVFTPNPGEGVEIKAYYIRTFPFLFSPTGDPLVPLVQNNAALSSFPEGYFYGTLYAYYDKNKNTDEAQKWLARFDDAYGVIEDQNYRGKWRGGDQHLTSEFQPRDYRYSFK
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