NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208312_100214

Scaffold Ga0208312_100214


Overview

Basic Information
Taxon OID3300027931 Open in IMG/M
Scaffold IDGa0208312_100214 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5743
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208312_1002141F081547N/AYLSCGIVNGGNLDAETYTIKEPELMMVRLGRDLYIVTSELKLIIPVEPVRVLLNSETSKVYNEMLSQGNEVKPA
Ga0208312_1002142F087442GAGGMMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVVVVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
Ga0208312_1002143F080245N/AVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHTLLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
Ga0208312_1002144F075084AGCAGGMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVFTKMTEMCSTYEVR
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